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Urate oxidase complexed with uric acid and chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L8W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 8 291 0.05M TRIS BUFFER PH 8, 8% PEG 8000, BATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.87 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.737 α = 90 b = 94.941 β = 90 c = 104.445 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SI(111) 2008-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.948 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 10.2 99 0.055 0.053 33.1 4.7 41223 39071 2 4 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 99 0.201 0.188 4.1 4.1 3868
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3L8W 1.75 10 41223 39071 1883 99.9 0.184 0.1794 0.1751 0.1786 0.208 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 8 2304.5 2627.5
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.124 s_angle_d 0.078 s_similar_adp_cmpnt 0.05 s_bond_d 0.049 s_zero_chiral_vol 0.048 s_non_zero_chiral_vol 0.048 s_from_restr_planes 0.0291 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 22
Software Software Software Name Purpose DNA data collection SHELX model building SHELXL-97 refinement HKL-2000 data reduction SCALEPACK data scaling SHELX phasing