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Structure of PvdQ covalently acylated with myristate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 10-15% PEG4000, 50-100 mM RbCl, 50 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.97 58.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.249 α = 90 b = 165.501 β = 90 c = 94.415 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2008-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97837, 0.97887, 0.9558 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 100 0.087 13.3 68791 68757 -3 -3 20.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 99.7 0.497 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 29.94 68791 65298 3448 99.7 0.17407 0.17407 0.17268 0.1867 0.19985 0.2136 RANDOM 24.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.69 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.409 r_dihedral_angle_4_deg 19.244 r_dihedral_angle_3_deg 12.131 r_dihedral_angle_1_deg 5.891 r_scangle_it 3.647 r_scbond_it 2.184 r_angle_refined_deg 1.343 r_mcangle_it 1.204 r_mcbond_it 0.657 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.409 r_dihedral_angle_4_deg 19.244 r_dihedral_angle_3_deg 12.131 r_dihedral_angle_1_deg 5.891 r_scangle_it 3.647 r_scbond_it 2.184 r_angle_refined_deg 1.343 r_mcangle_it 1.204 r_mcbond_it 0.657 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5467 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 91
Software Software Software Name Purpose SSRL data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling