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Structure of Pseudomonas aerugionsa PvdQ bound to octanoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L94 PDB entry 3L94
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 10-15 % PEG4000, 50-100 mM RbCl, 50 mM HEPES, pH 7.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.289 α = 90 b = 165.281 β = 90 c = 93.998 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.9782 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 93.8 0.045 19 103682 103682 -3 -3 22.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.75 68.1 0.358 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 3L94 1.66 30 103682 98384 5242 93.4 0.16842 0.16842 0.1675 0.1802 0.18536 0.1938 RANDOM 28.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 1.44 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.458 r_dihedral_angle_4_deg 15.577 r_dihedral_angle_3_deg 11.424 r_dihedral_angle_1_deg 5.545 r_scangle_it 3.617 r_scbond_it 2.125 r_angle_refined_deg 1.235 r_mcangle_it 1.219 r_mcbond_it 0.636 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.458 r_dihedral_angle_4_deg 15.577 r_dihedral_angle_3_deg 11.424 r_dihedral_angle_1_deg 5.545 r_scangle_it 3.617 r_scbond_it 2.125 r_angle_refined_deg 1.235 r_mcangle_it 1.219 r_mcbond_it 0.636 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5449 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 86
Software Software Software Name Purpose CHESS data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling