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The Crystal Structure of smu.143c from Streptococcus mutans UA159
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OS3 PDB entry 2OS3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 20% PEG 3350 , 0.1M HEPES pH7.5, 0.1M Lithium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.14 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.589 α = 90 b = 55.621 β = 90 c = 85.778 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2009-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 55.64 68 15962 10849 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.27 30.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2OS3 2 46.67 10312 537 68 0.21863 0.21531 0.2161 0.28524 0.2733 RANDOM 21.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.05 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.025 r_dihedral_angle_3_deg 17.971 r_dihedral_angle_4_deg 8.871 r_dihedral_angle_1_deg 6.738 r_scangle_it 4.157 r_scbond_it 2.701 r_angle_refined_deg 1.769 r_mcangle_it 1.593 r_mcbond_it 0.967 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.025 r_dihedral_angle_3_deg 17.971 r_dihedral_angle_4_deg 8.871 r_dihedral_angle_1_deg 6.738 r_scangle_it 4.157 r_scbond_it 2.701 r_angle_refined_deg 1.769 r_mcangle_it 1.593 r_mcbond_it 0.967 r_nbtor_refined 0.307 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.194 r_symmetry_vdw_refined 0.139 r_chiral_restr 0.125 r_symmetry_hbond_refined 0.03 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1562 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 1
Software Software Software Name Purpose PROTEUM PLUS data collection MOLREP phasing REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling