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Crystal structure of the S. solfataricus archaeal exosome
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 200 mM Mg(Ac)2, and 25 mM (NH4)2SO4), pH 8.6, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.09 41.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.122 α = 90 b = 145.484 β = 93.79 c = 97.245 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 50 90.4 0.16 5.3 2.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 72.8 0.474 1.9 2775
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.41 20 74262 7505 92.4 0.266 0.263 0.2633 0.289 0.2951 RANDOM 56.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -1.47 -0.6 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.397 r_dihedral_angle_3_deg 19.658 r_dihedral_angle_4_deg 18.794 r_dihedral_angle_1_deg 8.523 r_scangle_it 3.323 r_mcangle_it 2.756 r_scbond_it 1.91 r_mcbond_it 1.895 r_angle_refined_deg 1.621 r_chiral_restr 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.397 r_dihedral_angle_3_deg 19.658 r_dihedral_angle_4_deg 18.794 r_dihedral_angle_1_deg 8.523 r_scangle_it 3.323 r_mcangle_it 2.756 r_scbond_it 1.91 r_mcbond_it 1.895 r_angle_refined_deg 1.621 r_chiral_restr 0.221 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16378 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction