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Crystal Structure of the Xanthomonas campestris Gyrase A C-terminal Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 277 200mM ammonium sulfate, 100mM Bis-Tris pH 5.2-5.9, 25-29% (v/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.64 53.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.494 α = 79 b = 58.968 β = 79.78 c = 74.415 γ = 69.62
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2006-10-16 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 315 2006-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL12B2 0.97960, 0.96430 SPring-8 BL12B2 2 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0000 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.19 29 96.5 0.044 0.044 3.8 41787 40325 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.19 2.25 92.8 0.109
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.19 29 41787 38303 2022 96.33 0.22123 0.22123 0.2187 0.2185 0.27059 0.268 RANDOM 30.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.23 0.37 1.11 0.63 -1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.205 r_dihedral_angle_3_deg 20.978 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_1_deg 7.818 r_scangle_it 4.95 r_scbond_it 3.008 r_mcangle_it 2.02 r_angle_refined_deg 1.896 r_mcbond_it 1.099 r_chiral_restr 0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.205 r_dihedral_angle_3_deg 20.978 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_1_deg 7.818 r_scangle_it 4.95 r_scbond_it 3.008 r_mcangle_it 2.02 r_angle_refined_deg 1.896 r_mcbond_it 1.099 r_chiral_restr 0.157 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4745 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling