☰ Navigation Tabs
Crystal structure of camphor-bound P450cam at low [K+]
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CP4 PDB entry 5CP4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 279 12-22% PEG 8000, 0.05M Tris, 4-8mM camphor, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 279K
Crystal Properties Matthews coefficient Solvent content 1.96 37.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.362 α = 90 b = 98.194 β = 103.86 c = 54.197 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Rh coated flat mirror 2009-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 27.79 100 0.066 12.8 3.7 57384 14.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.58 100 0.529 2.3 3.6 8365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 5CP4 1.5 10 54283 2898 100 0.16589 0.16424 0.1639 0.19652 0.1968 RANDOM 15.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.94 0.05 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.688 r_dihedral_angle_3_deg 13.173 r_dihedral_angle_4_deg 11.099 r_dihedral_angle_1_deg 5.157 r_scangle_it 2.989 r_scbond_it 1.814 r_angle_refined_deg 1.407 r_mcangle_it 1.069 r_mcbond_it 0.563 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.688 r_dihedral_angle_3_deg 13.173 r_dihedral_angle_4_deg 11.099 r_dihedral_angle_1_deg 5.157 r_scangle_it 2.989 r_scbond_it 1.814 r_angle_refined_deg 1.407 r_mcangle_it 1.069 r_mcbond_it 0.563 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3207 Nucleic Acid Atoms Solvent Atoms 452 Heterogen Atoms 55
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling