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Crystal structure of yeast monothiol glutaredoxin Grx6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 19% polyethylene glycol monomethyl ether 5000, 0.1M 2-(N-morpholino)-ethane sulfonic acid (MES), pH 6.5, 10mM reduced glutathione (GSH), VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.89 57.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.556 α = 90 b = 57.132 β = 90 c = 59.095 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-11-13 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9795 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 96.7 0.077 35.13 9.3 27154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 94.1 0.671 2.26 7.3 1301
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 25.72 25588 1362 96.25 0.18051 0.17942 0.1772 0.20035 0.1997 RANDOM 18.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.54 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.219 r_dihedral_angle_3_deg 10.159 r_dihedral_angle_4_deg 7.27 r_dihedral_angle_1_deg 5.711 r_sphericity_free 3.328 r_scangle_it 2.815 r_sphericity_bonded 2.776 r_scbond_it 2.442 r_rigid_bond_restr 2.307 r_mcangle_it 1.343
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.219 r_dihedral_angle_3_deg 10.159 r_dihedral_angle_4_deg 7.27 r_dihedral_angle_1_deg 5.711 r_sphericity_free 3.328 r_scangle_it 2.815 r_sphericity_bonded 2.776 r_scbond_it 2.442 r_rigid_bond_restr 2.307 r_mcangle_it 1.343 r_angle_refined_deg 1.23 r_mcbond_it 1.089 r_nbtor_refined 0.303 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.124 r_xyhbond_nbd_refined 0.098 r_chiral_restr 0.097 r_symmetry_hbond_refined 0.061 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 913 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 20
Software Software Software Name Purpose MAR345dtb data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling