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Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MDA 1mda, 1iqc experimental model PDB 1IQC 1mda, 1iqc
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 293 0.1M MES pH 6.4, 0.1M sodium acetate, 24-30 % w/v PEG 8000, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.527 α = 109.94 b = 83.524 β = 91.54 c = 107.782 γ = 105.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD BIOMORPH MIRRORS (KIRKPATRICK-BAEZ CONFIGURATION) 2008-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.02665 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50 93.1 0.067 0.067 10.74 2.3 113264 105427 -3 27.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 68.6 0.176 4.3 1.7 11318
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1mda, 1iqc 2.02 44.49 113788 105423 5298 92.65 0.138 0.138 0.135 0.1441 0.189 0.1973 RANDOM 15.169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.176 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 15.336 r_dihedral_angle_1_deg 6.48 r_scangle_it 5.009 r_scbond_it 3.23 r_angle_refined_deg 2.02 r_mcangle_it 1.922 r_mcbond_it 1.104 r_chiral_restr 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.176 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 15.336 r_dihedral_angle_1_deg 6.48 r_scangle_it 5.009 r_scbond_it 3.23 r_angle_refined_deg 2.02 r_mcangle_it 1.922 r_mcbond_it 1.104 r_chiral_restr 0.178 r_bond_refined_d 0.023 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13231 Nucleic Acid Atoms Solvent Atoms 1304 Heterogen Atoms 207
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection