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PWWP domain of human bromodomain and PHD finger containing protein 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 291 3.5M sodium formate, 0.1M TRIS-hydrochloride, pH 8.5, vapor diffusion, temperature 291K 2 VAPOR DIFFUSION 7.5 291 25% PEG3350, 0.1M ammonium sulfate, 0.1M HEPES, pH 7.5, vapor diffusion, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.352 α = 90 b = 44.352 β = 90 c = 122.722 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-05 M SINGLE WAVELENGTH 2 2 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97711 APS 19-ID 2 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 40 99.9 0.056 12.2 14.5 31403
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.3 1.32 100 0.465 13.8 1544
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 30 31089 1565 99.926 0.21 0.209 0.2121 0.233 0.2341 RANDOM 10.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.007 -0.007 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.245 r_dihedral_angle_3_deg 13.53 r_dihedral_angle_4_deg 9.874 r_dihedral_angle_1_deg 5.307 r_scangle_it 3.455 r_scbond_it 2.443 r_mcangle_it 1.855 r_angle_refined_deg 1.632 r_mcbond_it 1.096 r_angle_other_deg 0.968
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.245 r_dihedral_angle_3_deg 13.53 r_dihedral_angle_4_deg 9.874 r_dihedral_angle_1_deg 5.307 r_scangle_it 3.455 r_scbond_it 2.443 r_mcangle_it 1.855 r_angle_refined_deg 1.632 r_mcbond_it 1.096 r_angle_other_deg 0.968 r_mcbond_other 0.308 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 983 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling