☰ Navigation Tabs
Crystal structure of Putative phosphatase (NP_812416.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.77 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.36 277 0.2000M zinc acetate, 7.3000% polyethylene glycol 8000, 0.1M MES pH 6.36, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.59 52.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.83 α = 90 b = 124.623 β = 90 c = 98.389 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR 2009-01-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97951 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 29.26 98.1 0.041 12.04 56480 -3 26.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.83 95.9 0.518 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.77 29.26 56453 2862 99.2 0.176 0.175 0.1879 0.198 0.2131 RANDOM 17.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 1.36 -2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.682 r_dihedral_angle_4_deg 12.624 r_dihedral_angle_3_deg 9.347 r_dihedral_angle_1_deg 4.125 r_scangle_it 2.407 r_scbond_it 1.547 r_angle_refined_deg 1.394 r_mcangle_it 0.883 r_angle_other_deg 0.846 r_mcbond_it 0.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.682 r_dihedral_angle_4_deg 12.624 r_dihedral_angle_3_deg 9.347 r_dihedral_angle_1_deg 4.125 r_scangle_it 2.407 r_scbond_it 1.547 r_angle_refined_deg 1.394 r_mcangle_it 0.883 r_angle_other_deg 0.846 r_mcbond_it 0.513 r_mcbond_other 0.119 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3730 Nucleic Acid Atoms Solvent Atoms 422 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction