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Crystal structure of Z. mays CK2 kinase alpha subunit in complex with the inhibitor K74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 20% PEG 4000, 0.2M Na-acetate, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.49 50.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.185 α = 90 b = 60.533 β = 103.04 c = 45.873 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2008-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976250 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 69.34 91.2 0.065 0.065 17.2 5 35009 30.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 62.6 0.379 0.379 1.9 3.8 3510
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body in an isomorphous cell THROUGHOUT 1.75 69.338 34991 1755 91.07 0.227 0.224 0.239 0.282 0.2911 RANDOM 35.788
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.03 -1.23 -0.19 2.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.838 r_dihedral_angle_4_deg 20.808 r_dihedral_angle_3_deg 17.27 r_dihedral_angle_1_deg 6.75 r_scangle_it 4.064 r_scbond_it 2.853 r_angle_refined_deg 1.99 r_mcangle_it 1.693 r_mcbond_it 1.096 r_chiral_restr 0.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.838 r_dihedral_angle_4_deg 20.808 r_dihedral_angle_3_deg 17.27 r_dihedral_angle_1_deg 6.75 r_scangle_it 4.064 r_scbond_it 2.853 r_angle_refined_deg 1.99 r_mcangle_it 1.693 r_mcbond_it 1.096 r_chiral_restr 0.141 r_bond_refined_d 0.022 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2721 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 20
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction