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Crystal Structure of NGO0477 from Neisseria gonorrhoeae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 0.1M Tris HCl, 22% PEG 400, 0.3M tri-sodium citrate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.823 α = 90 b = 124.823 β = 90 c = 137.577 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-04-10 M MAD 2 2 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-02-18 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97800 ESRF BM14 2 SYNCHROTRON ESRF BEAMLINE BM14 0.90499 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 30 99.7 0.238 10.3 10.7 19515 -1 48.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.9 97.3 0.923 2.2 8.5 1929
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 26.31 18502 1004 99.39 0.23236 0.2298 0.2376 0.27968 0.2318 RANDOM 42.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.61 1.3 2.61 -3.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.8 r_dihedral_angle_4_deg 20.632 r_dihedral_angle_3_deg 19.547 r_scangle_it 14.634 r_scbond_it 9.405 r_mcangle_it 7.55 r_dihedral_angle_1_deg 5.842 r_mcbond_it 4.749 r_angle_refined_deg 1.174 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.8 r_dihedral_angle_4_deg 20.632 r_dihedral_angle_3_deg 19.547 r_scangle_it 14.634 r_scbond_it 9.405 r_mcangle_it 7.55 r_dihedral_angle_1_deg 5.842 r_mcbond_it 4.749 r_angle_refined_deg 1.174 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4062 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 71
Software Software Software Name Purpose SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling