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X-ray structure of NS1 effector domain W187Y mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EE9 PDB ENTRY 3EE9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 277 0.3M magnesium formate and 0.1M Bis-Tris , pH 5.5, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.99 58.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.991 α = 90 b = 60.236 β = 90 c = 132.655 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate VARIMAX 2009-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 50 99 0.048 0.041 51.4 10 19795 18310
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.21 2.29 90.5 0.175 0.242 62.2 6.3 1771
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EE9 2.21 36.12 19795 18310 983 97.02 0.22362 0.22362 0.22184 0.2259 0.25762 0.2532 RANDOM 36.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 0.93 -2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.292 r_dihedral_angle_4_deg 14.007 r_dihedral_angle_3_deg 13.742 r_scangle_it 5.851 r_dihedral_angle_1_deg 5.644 r_scbond_it 3.539 r_mcangle_it 2.34 r_mcbond_it 1.23 r_angle_refined_deg 1.003 r_angle_other_deg 0.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.292 r_dihedral_angle_4_deg 14.007 r_dihedral_angle_3_deg 13.742 r_scangle_it 5.851 r_dihedral_angle_1_deg 5.644 r_scbond_it 3.539 r_mcangle_it 2.34 r_mcbond_it 1.23 r_angle_refined_deg 1.003 r_angle_other_deg 0.516 r_mcbond_other 0.221 r_chiral_restr 0.058 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1889 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling