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The Crystal Structure of the Tudor Domains from FXR1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H8Z
Crystallization Crystal Properties Matthews coefficient Solvent content 3.18 61.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.102 α = 90 b = 73.102 β = 90 c = 94.412 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2009-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 26.29 5131
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3H8Z 2.7 26.29 4891 237 99.88 0.24986 0.24767 0.2455 0.29577 0.2953 RANDOM 92.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.06 -0.13 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.886 r_dihedral_angle_3_deg 26.882 r_dihedral_angle_4_deg 26.414 r_dihedral_angle_1_deg 13.384 r_scangle_it 7.536 r_scbond_it 4.446 r_mcangle_it 3.465 r_mcbond_it 1.797 r_angle_refined_deg 0.88 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.886 r_dihedral_angle_3_deg 26.882 r_dihedral_angle_4_deg 26.414 r_dihedral_angle_1_deg 13.384 r_scangle_it 7.536 r_scbond_it 4.446 r_mcangle_it 3.465 r_mcbond_it 1.797 r_angle_refined_deg 0.88 r_chiral_restr 0.071 r_gen_planes_refined 0.021 r_bond_refined_d 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 893 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement