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Crystal structure of Putative sugar isomerase (YP_050048.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 1.54 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.2000M MgCl2, 10.0000% PEG-8000, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.653 α = 90 b = 79.653 β = 90 c = 194.406 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97855,0.97799 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 29.323 99.1 0.079 12.56 106036 -3 16.505
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.6 95 0.858 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.54 29.323 105995 5292 99.29 0.137 0.136 0.1508 0.157 0.1682 RANDOM 27.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.06 0.12 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.633 r_dihedral_angle_4_deg 17.203 r_dihedral_angle_3_deg 11.935 r_dihedral_angle_1_deg 5.273 r_scangle_it 4.948 r_scbond_it 3.573 r_mcangle_it 2.069 r_mcbond_it 1.593 r_angle_refined_deg 1.517 r_angle_other_deg 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.633 r_dihedral_angle_4_deg 17.203 r_dihedral_angle_3_deg 11.935 r_dihedral_angle_1_deg 5.273 r_scangle_it 4.948 r_scbond_it 3.573 r_mcangle_it 2.069 r_mcbond_it 1.593 r_angle_refined_deg 1.517 r_angle_other_deg 1.06 r_mcbond_other 0.377 r_symmetry_vdw_other 0.261 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.221 r_metal_ion_refined 0.22 r_nbd_other 0.189 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.174 r_symmetry_metal_ion_refined 0.146 r_chiral_restr 0.094 r_nbtor_other 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5217 Nucleic Acid Atoms Solvent Atoms 709 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing