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Crystal Structure of single chain PvuII
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 290 1.28-1.36 M ammonium sulfate, 5% MPD, 100 mM bis-Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.45 64.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.921 α = 90 b = 101.921 β = 90 c = 100.284 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.81280 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 102.06 42525
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 102.06 42168 2122 98.6 0.219 0.215 0.2146 0.283 RANDOM 48.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 1.23 -2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.435 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_4_deg 15.952 r_dihedral_angle_1_deg 4.244 r_scangle_it 4.057 r_scbond_it 2.759 r_angle_refined_deg 2.087 r_mcangle_it 2.058 r_mcbond_it 1.193 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.435 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_4_deg 15.952 r_dihedral_angle_1_deg 4.244 r_scangle_it 4.057 r_scbond_it 2.759 r_angle_refined_deg 2.087 r_mcangle_it 2.058 r_mcbond_it 1.193 r_nbtor_refined 0.319 r_symmetry_hbond_refined 0.284 r_nbd_refined 0.257 r_xyhbond_nbd_refined 0.201 r_symmetry_vdw_refined 0.175 r_chiral_restr 0.16 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5109 Nucleic Acid Atoms Solvent Atoms 469 Heterogen Atoms 49
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction