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The alkanesulfonate-binding protein SsuA from Xabthomonas axonopodis pv. citri bound to MES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3E4R PDB ENTRY 3E4R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.2 M MES, pH 6.5, 0.1 M NaCl, 1.6 M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.78 30.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.868 α = 90 b = 86.364 β = 97.46 c = 46.454 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MARMOSAIC 225 mm CCD mirrors 2009-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.46 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 95.1 0.113 6.7 3.4 16418 15613 2 2 22.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 80.5 0.402 2.9 1321
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3E4R 2 24.09 2 16418 15591 802 95.02 0.188 0.184 0.1873 0.256 0.2564 RANDOM 27.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_4_deg 20.411 r_dihedral_angle_3_deg 17.711 r_dihedral_angle_1_deg 6.687 r_scangle_it 4.986 r_scbond_it 3.275 r_angle_refined_deg 2.06 r_mcangle_it 1.798 r_mcbond_it 1.119 r_chiral_restr 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_4_deg 20.411 r_dihedral_angle_3_deg 17.711 r_dihedral_angle_1_deg 6.687 r_scangle_it 4.986 r_scbond_it 3.275 r_angle_refined_deg 2.06 r_mcangle_it 1.798 r_mcbond_it 1.119 r_chiral_restr 0.23 r_bond_refined_d 0.024 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2190 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection