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Crystal structure of the heme domain of flavocytochrome b2 in complex with Fab B2B4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 291 20 % PEG 4000, 0.1 M MES pH 6.5, 0.2 M MgCl2, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.58 α = 90 b = 83.68 β = 96.8 c = 92.165 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 25 97 0.165 0.165 9.1 3.5 29267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 94.6 0.666 0.666 1.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 24.75 27762 1487 96.64 0.21771 0.21399 0.28907 0.1991 RANDOM 43.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.22 -0.15 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.093 r_dihedral_angle_4_deg 28.341 r_dihedral_angle_3_deg 19.179 r_dihedral_angle_1_deg 6.449 r_scangle_it 2.869 r_angle_refined_deg 1.821 r_scbond_it 1.732 r_mcangle_it 1.29 r_mcbond_it 0.688 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.093 r_dihedral_angle_4_deg 28.341 r_dihedral_angle_3_deg 19.179 r_dihedral_angle_1_deg 6.449 r_scangle_it 2.869 r_angle_refined_deg 1.821 r_scbond_it 1.732 r_mcangle_it 1.29 r_mcbond_it 0.688 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7803 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing CNS refinement PDB_EXTRACT data extraction MOSFLM data reduction