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Crystal Structure of the Thermostable Old Yellow Enzyme from Thermoanaerobacter pseudethanolicus E39
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 298 0.1M Na acetate, 0.1M CaCl2, 20% isopropanol, 12% ethylene glycol, pH 4.6, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.925 α = 90 b = 97.376 β = 92.34 c = 94.388 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 94.491 98.9 0.064 0.064 11.7 2.8 574512 204058
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 99.9 0.351 0.351 2.1 2.8 30005
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 64.82 204027 10251 98.76 0.153 0.152 0.1602 0.179 0.1882 RANDOM 18.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.513 r_dihedral_angle_4_deg 16.261 r_dihedral_angle_3_deg 11.95 r_dihedral_angle_1_deg 5.533 r_scangle_it 2.766 r_scbond_it 1.9 r_angle_refined_deg 1.295 r_mcangle_it 1.107 r_angle_other_deg 0.9 r_mcbond_it 0.821
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.513 r_dihedral_angle_4_deg 16.261 r_dihedral_angle_3_deg 11.95 r_dihedral_angle_1_deg 5.533 r_scangle_it 2.766 r_scbond_it 1.9 r_angle_refined_deg 1.295 r_mcangle_it 1.107 r_angle_other_deg 0.9 r_mcbond_it 0.821 r_symmetry_vdw_other 0.32 r_nbd_refined 0.208 r_nbd_other 0.201 r_nbtor_refined 0.176 r_mcbond_other 0.175 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.134 r_symmetry_vdw_refined 0.121 r_nbtor_other 0.083 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10519 Nucleic Acid Atoms Solvent Atoms 1831 Heterogen Atoms 140
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction