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Structure of a bacterial homolog of vitamin K epoxide reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 15% PEG1000, 0.2M magnesium chloride, pH 7, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.85 78.985
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.942 α = 90 b = 136.942 β = 90 c = 68.48 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 2008-11-20 M MIR
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 1.00718 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 118.6 99.1 8650 8572 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3.6 44.83 7714 855 99.05 0.25627 0.25114 0.2515 0.305 0.3072 RANDOM 55.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.74 1.37 2.74 -4.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_3_deg 22.001 r_dihedral_angle_4_deg 17.564 r_dihedral_angle_1_deg 7.79 r_angle_refined_deg 1.492 r_scangle_it 1.443 r_scbond_it 0.847 r_mcangle_it 0.692 r_mcbond_it 0.355 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_3_deg 22.001 r_dihedral_angle_4_deg 17.564 r_dihedral_angle_1_deg 7.79 r_angle_refined_deg 1.492 r_scangle_it 1.443 r_scbond_it 0.847 r_mcangle_it 0.692 r_mcbond_it 0.355 r_chiral_restr 0.106 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1963 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement