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The thioredoxin-like domain of a VKOR homolog from Synechococcus sp.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.8 298 0.6M sodium potassium tartrate, 10% PEG MME 5000, pH 7.8, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.088 α = 90 b = 57.088 β = 90 c = 57.83 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 2008-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 50 99.9 11831 11819 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.66 33.1 1.5 11819 11208 565 99.87 0.19527 0.19441 0.1945 0.21214 0.2101 RANDOM 19.564
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.52 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.684 r_dihedral_angle_4_deg 21.85 r_dihedral_angle_3_deg 11.942 r_dihedral_angle_1_deg 4.943 r_sphericity_free 3.72 r_scangle_it 2.997 r_sphericity_bonded 2.252 r_scbond_it 1.909 r_mcangle_it 1.389 r_angle_refined_deg 1.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.684 r_dihedral_angle_4_deg 21.85 r_dihedral_angle_3_deg 11.942 r_dihedral_angle_1_deg 4.943 r_sphericity_free 3.72 r_scangle_it 2.997 r_sphericity_bonded 2.252 r_scbond_it 1.909 r_mcangle_it 1.389 r_angle_refined_deg 1.136 r_rigid_bond_restr 1.071 r_mcbond_it 0.767 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 704 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling