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Crystal structure of Protein with a cyclophilin-like fold (YP_831253.1) from Arthrobacter sp. FB24 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 10.0000% MPD, 0.1M Acetate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.294 α = 90 b = 98.102 β = 93.19 c = 84.503 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-07-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97963 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.907 99.5 0.086 0.086 9 2.6 88263 18.599
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 100 0.498 0.498 2 2.5 6518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.907 88235 4416 99.3 0.162 0.16 0.1671 0.196 0.1989 RANDOM 19.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.92 -0.64 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.551 r_dihedral_angle_4_deg 16.064 r_dihedral_angle_3_deg 11.239 r_dihedral_angle_1_deg 6.571 r_scangle_it 2.784 r_scbond_it 1.77 r_angle_refined_deg 1.401 r_mcangle_it 1.245 r_angle_other_deg 0.909 r_mcbond_it 0.671
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.551 r_dihedral_angle_4_deg 16.064 r_dihedral_angle_3_deg 11.239 r_dihedral_angle_1_deg 6.571 r_scangle_it 2.784 r_scbond_it 1.77 r_angle_refined_deg 1.401 r_mcangle_it 1.245 r_angle_other_deg 0.909 r_mcbond_it 0.671 r_mcbond_other 0.18 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7467 Nucleic Acid Atoms Solvent Atoms 814 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction