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Crystal structure of Putative sugar binding protein (NP_459565.1) from Salmonella typhimurium LT2 at 2.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 37.1000% 2-ethoxyethanol, 0.0500M calcium acetate, 0.1M Imidazole pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.3 62.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.028 α = 90 b = 173.344 β = 90 c = 208.574 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-03-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97934,0.97922 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 29.907 99.9 0.123 0.123 9.6 3.8 113412 48.836
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 100 0.81 0.81 1.6 3.8 8264
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 29.907 113329 5672 99.97 0.205 0.203 0.2062 0.232 0.2344 RANDOM 27.788
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.83 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.974 r_dihedral_angle_4_deg 11.969 r_dihedral_angle_3_deg 10.066 r_scangle_it 4.254 r_scbond_it 2.956 r_dihedral_angle_1_deg 2.453 r_mcangle_it 1.339 r_angle_refined_deg 1.148 r_angle_other_deg 0.774 r_mcbond_it 0.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.974 r_dihedral_angle_4_deg 11.969 r_dihedral_angle_3_deg 10.066 r_scangle_it 4.254 r_scbond_it 2.956 r_dihedral_angle_1_deg 2.453 r_mcangle_it 1.339 r_angle_refined_deg 1.148 r_angle_other_deg 0.774 r_mcbond_it 0.634 r_mcbond_other 0.167 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14786 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction