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Bacillus cereus metallo-beta-lactamase Cys221Asp mutant, 20 mM Zn(II)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.9 293 0.1 M Sodium Acetate, 2.8 M Ammonium Sulfate, 20 mM Zinc Sulfate, pH 4.9, Vapor diffusion, hanging drop., temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.784 α = 90 b = 94.341 β = 119.62 c = 79.776 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.421 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 69.34 94.5 0.04 18.7 3.8 132288
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 88.9 0.299 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.58 23.3 125621 6660 94.47 0.16305 0.16144 0.1639 0.19364 0.1908 RANDOM 13.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.43 -0.02 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.064 r_dihedral_angle_3_deg 12.263 r_dihedral_angle_4_deg 11.568 r_dihedral_angle_1_deg 6.549 r_scangle_it 4.554 r_scbond_it 2.832 r_angle_other_deg 2.006 r_mcangle_it 1.878 r_angle_refined_deg 1.664 r_mcbond_it 1.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.064 r_dihedral_angle_3_deg 12.263 r_dihedral_angle_4_deg 11.568 r_dihedral_angle_1_deg 6.549 r_scangle_it 4.554 r_scbond_it 2.832 r_angle_other_deg 2.006 r_mcangle_it 1.878 r_angle_refined_deg 1.664 r_mcbond_it 1.082 r_mcbond_other 0.306 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6457 Nucleic Acid Atoms Solvent Atoms 1318 Heterogen Atoms 80
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction