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uncharacterized protein BP1543 from Bordetella pertussis Tohama I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 297 0.2M Ammonium Acetate, 0.1M This-Cl pH 8.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.212 α = 90 b = 72.462 β = 112.05 c = 61.737 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97962 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.9 0.065 55.43 7.4 28802 28761 -3 17.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 99.4 0.161 16.76 6.3 1402
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 50 28740 28740 1457 99.58 0.14792 0.14792 0.14518 0.167 0.19921 0.2137 RANDOM 10.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.66 0.62 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.376 r_dihedral_angle_4_deg 18.725 r_dihedral_angle_3_deg 13.368 r_dihedral_angle_1_deg 5.648 r_scangle_it 2.833 r_scbond_it 1.744 r_angle_refined_deg 1.275 r_mcangle_it 1.053 r_mcbond_it 0.584 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.376 r_dihedral_angle_4_deg 18.725 r_dihedral_angle_3_deg 13.368 r_dihedral_angle_1_deg 5.648 r_scangle_it 2.833 r_scbond_it 1.744 r_angle_refined_deg 1.275 r_mcangle_it 1.053 r_mcbond_it 0.584 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4000 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 10
Software Software Software Name Purpose SBC-Collect data collection PHENIX model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing