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Crystal structure of response regulator from Hahella chejuensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 298 0.1M NaCl, 0.1M HEPES pH 7.5, 1.6M Ammonium Sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.88 57.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.09 α = 90 b = 57.09 β = 90 c = 200.456 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2009-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 39.75 100 0.074 11.3 40 11490 41.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 0.403 11.5 41.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 39.75 12140 11490 578 99.7 0.227 0.224 0.2233 0.288 0.2769 RANDOM 37.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.828 r_dihedral_angle_4_deg 22.914 r_dihedral_angle_3_deg 17.198 r_dihedral_angle_1_deg 6.04 r_scangle_it 5.509 r_scbond_it 3.658 r_mcangle_it 2.549 r_angle_refined_deg 1.965 r_mcbond_it 1.583 r_symmetry_hbond_refined 0.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.828 r_dihedral_angle_4_deg 22.914 r_dihedral_angle_3_deg 17.198 r_dihedral_angle_1_deg 6.04 r_scangle_it 5.509 r_scbond_it 3.658 r_mcangle_it 2.549 r_angle_refined_deg 1.965 r_mcbond_it 1.583 r_symmetry_hbond_refined 0.634 r_symmetry_vdw_refined 0.39 r_nbtor_refined 0.317 r_nbd_refined 0.271 r_xyhbond_nbd_refined 0.234 r_chiral_restr 0.139 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1034 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling