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Crystal structure of human Cu/Zn superoxide dismutase recombinantly produced in Leishmania tarantolae; P212121 crystal form containing 12 chains in the asymmetric unit
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 21-25% (w/v) PEG4000, 0.1 M NaOAc, pH 4.2-5.2, vapor diffusion, hanging drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.9 57.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.5 α = 90 b = 166.61 β = 90 c = 174.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD SI(111) 2008-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9797 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 50 99.9 0.189 11.16 28607 -3 42.624
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.5 3.6 100 0.575 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.5 47.78 28597 1446 99.96 0.244 0.243 0.2231 0.277 0.2443 RANDOM 75.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 4.59 -4.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.026 r_dihedral_angle_3_deg 16.443 r_dihedral_angle_4_deg 10.638 r_dihedral_angle_1_deg 6.284 r_angle_other_deg 4.443 r_angle_refined_deg 1.173 r_scangle_it 0.651 r_scbond_it 0.368 r_mcangle_it 0.27 r_mcbond_it 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.026 r_dihedral_angle_3_deg 16.443 r_dihedral_angle_4_deg 10.638 r_dihedral_angle_1_deg 6.284 r_angle_other_deg 4.443 r_angle_refined_deg 1.173 r_scangle_it 0.651 r_scbond_it 0.368 r_mcangle_it 0.27 r_mcbond_it 0.147 r_chiral_restr 0.062 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13312 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 39
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction