☰ Navigation Tabs
Crystal structure of SnoaB, a cofactor-independent oxygenase from Streptomyces nogalater, determined to 1.7 resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 PEG MME 2K, KBr, pentaerythritol ethoxylate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 1.97 31.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.262 α = 90 b = 112.383 β = 90 c = 47.127 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2009-02-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 94.8 0.035 24.8 5.1 32939 32939 23.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 73.1 0.354 2.6 2.8 3585
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 40 32936 32936 1614 94.4 0.176 0.176 0.174 0.1968 0.211 0.2261 RANDOM 20.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.88 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.272 r_dihedral_angle_4_deg 15.702 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 6.213 r_scangle_it 4.47 r_scbond_it 2.917 r_mcangle_it 2.138 r_angle_refined_deg 1.328 r_mcbond_it 1.236 r_angle_other_deg 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.272 r_dihedral_angle_4_deg 15.702 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 6.213 r_scangle_it 4.47 r_scbond_it 2.917 r_mcangle_it 2.138 r_angle_refined_deg 1.328 r_mcbond_it 1.236 r_angle_other_deg 0.877 r_mcbond_other 0.35 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2335 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 15
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MxCuBE data collection