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Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae in the Hexagonal, P61 space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 1600mM tri-sodium citrate dehydrate, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.62 66.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.052 α = 90 b = 135.052 β = 90 c = 56.154 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2009-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97929 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25.92 99.2 0.089 21.2 21.7 34126 32.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 99 0.502 8.2 19.8 4940
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 25.52 34114 1727 100 0.192 0.19 0.1951 0.23 0.2343 RANDOM 35.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.409 r_dihedral_angle_3_deg 12.446 r_dihedral_angle_4_deg 11.826 r_dihedral_angle_1_deg 5.948 r_scangle_it 4.097 r_scbond_it 3.038 r_mcangle_it 2.166 r_mcbond_it 1.767 r_angle_refined_deg 1.494 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.409 r_dihedral_angle_3_deg 12.446 r_dihedral_angle_4_deg 11.826 r_dihedral_angle_1_deg 5.948 r_scangle_it 4.097 r_scbond_it 3.038 r_mcangle_it 2.166 r_mcbond_it 1.767 r_angle_refined_deg 1.494 r_angle_other_deg 0.901 r_mcbond_other 0.315 r_symmetry_vdw_other 0.303 r_symmetry_vdw_refined 0.27 r_nbd_refined 0.212 r_nbd_other 0.203 r_nbtor_refined 0.186 r_symmetry_hbond_refined 0.149 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.091 r_nbtor_other 0.09 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2306 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling SHELX phasing SHELXD phasing SHELXE model building