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CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE (BDI_1141) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.00 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.67 277 25.0000% Glycerol, 1.1000M ammonium dihydrogen phosphate, 0.1M citric acid pH 5.67, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.28 71.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.167 α = 90 b = 159.397 β = 91.64 c = 78.23 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-06-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97913,0.97860 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.928 96.9 0.085 7.59 125591 -3 25.142
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 95.9 0.559 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 28.928 125591 6308 99.57 0.172 0.17 0.173 0.2 0.2023 RANDOM 25.486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 0.1 -0.18 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.937 r_dihedral_angle_4_deg 20.192 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 6.006 r_scangle_it 4.191 r_scbond_it 2.516 r_mcangle_it 1.561 r_angle_refined_deg 1.523 r_angle_other_deg 0.883 r_mcbond_it 0.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.937 r_dihedral_angle_4_deg 20.192 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 6.006 r_scangle_it 4.191 r_scbond_it 2.516 r_mcangle_it 1.561 r_angle_refined_deg 1.523 r_angle_other_deg 0.883 r_mcbond_it 0.839 r_mcbond_other 0.208 r_chiral_restr 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7696 Nucleic Acid Atoms Solvent Atoms 1095 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing