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Factor inhibiting HIF-1 alpha in complex with 8-hydroxyquinoline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.6M ammonium sulfate, 2% polyethyleneglycol 400, 0.1M Tris-HCl, pH 7.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.49 64.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.912 α = 90 b = 86.912 β = 90 c = 144.559 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 0.979 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 42.14 98.4 0.074 23.6 10.4 25332
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 90 0.665 4.8 2256
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.59 42.14 16313 834 91.4 0.259 0.255 0.2455 0.335 0.3253 RANDOM 64.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.24 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.169 r_dihedral_angle_3_deg 19.67 r_dihedral_angle_4_deg 18.285 r_dihedral_angle_1_deg 6.834 r_scangle_it 2.874 r_scbond_it 1.865 r_angle_refined_deg 1.575 r_mcangle_it 1.572 r_mcbond_it 0.919 r_nbtor_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.169 r_dihedral_angle_3_deg 19.67 r_dihedral_angle_4_deg 18.285 r_dihedral_angle_1_deg 6.834 r_scangle_it 2.874 r_scbond_it 1.865 r_angle_refined_deg 1.575 r_mcangle_it 1.572 r_mcbond_it 0.919 r_nbtor_refined 0.324 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.261 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.109 r_bond_refined_d 0.015 r_metal_ion_refined 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2689 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 22
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction