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Progesterone receptor bound to sulfonamide pyrrolidine partial agonist
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 20% PEG 3350, 2mM Li2SO4, HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.21 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.394 α = 90 b = 64.349 β = 96.53 c = 70.42 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 97.2 0.064 8.6 3.5 39206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 84.9 0.387 2.8 3394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 50 34246 1752 98.93 0.197 0.194 0.2166 0.25 0.2701 RANDOM 34.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.94 2.26 -1.72 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.238 r_dihedral_angle_3_deg 12.559 r_dihedral_angle_4_deg 11.525 r_dihedral_angle_1_deg 4.599 r_scangle_it 1.022 r_angle_refined_deg 0.875 r_angle_other_deg 0.795 r_scbond_it 0.648 r_mcangle_it 0.446 r_mcbond_it 0.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.238 r_dihedral_angle_3_deg 12.559 r_dihedral_angle_4_deg 11.525 r_dihedral_angle_1_deg 4.599 r_scangle_it 1.022 r_angle_refined_deg 0.875 r_angle_other_deg 0.795 r_scbond_it 0.648 r_mcangle_it 0.446 r_mcbond_it 0.274 r_symmetry_vdw_other 0.242 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.181 r_nbtor_refined 0.171 r_nbd_other 0.16 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.104 r_nbtor_other 0.084 r_chiral_restr 0.046 r_mcbond_other 0.04 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3942 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 59
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection