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Frog M-ferritin, EQH mutant, with cobalt
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KA3 PDB entry 3KA3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 2M MgCl2, 0.1M Bicine pH 9.0, 0.1M CoCl2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.12 60.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.49 α = 90 b = 183.49 β = 90 c = 183.49 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirror 1: plane parabola Pt and Rh-coated Invar steel. Mirror 2: torroid Pt and Rh-coated Si M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 100 0.085 0.085 19.2 13.1 58309
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.42 100 0.835 0.835 0.9 9.4 8372
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3KA3 1.35 50 58294 2951 99.97 0.131 0.13 0.1305 0.153 0.1503 RANDOM 14.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.967 r_dihedral_angle_4_deg 22.527 r_sphericity_free 13.343 r_dihedral_angle_3_deg 13.301 r_scangle_it 6.373 r_dihedral_angle_1_deg 5.079 r_scbond_it 4.606 r_sphericity_bonded 3.955 r_mcangle_it 2.657 r_rigid_bond_restr 2.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.967 r_dihedral_angle_4_deg 22.527 r_sphericity_free 13.343 r_dihedral_angle_3_deg 13.301 r_scangle_it 6.373 r_dihedral_angle_1_deg 5.079 r_scbond_it 4.606 r_sphericity_bonded 3.955 r_mcangle_it 2.657 r_rigid_bond_restr 2.125 r_angle_refined_deg 1.957 r_mcbond_it 1.937 r_angle_other_deg 1.785 r_mcbond_other 0.811 r_chiral_restr 0.142 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1416 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 18
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction