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MK2 complex with inhibitor 6-(5-(2-aminopyrimidin-4-ylamino)-2-hydroxyphenyl)-N-methylbenzo[b]thiophene-2-carboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 2M Sodium Malonate
pH 5.5
Anapoe 80 , VAPOR DIFFUSION, SITTING DROP, temperature 291.0K
Crystal Properties Matthews coefficient Solvent content 4.59 73.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 253.508 α = 90 b = 253.508 β = 90 c = 253.508 γ = 90
Symmetry Space Group F 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2005-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 86.2 0.093 10.9 8.2 16005 15117 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 0.574 3.71 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 19.86 15103 796 99.76 0.23157 0.22974 0.2185 0.265 0.2526 RANDOM 62.424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.101 r_dihedral_angle_3_deg 20.003 r_dihedral_angle_4_deg 18.197 r_dihedral_angle_1_deg 5.416 r_scangle_it 3.354 r_scbond_it 2.321 r_angle_refined_deg 1.563 r_mcangle_it 1.231 r_mcbond_it 1.031 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.101 r_dihedral_angle_3_deg 20.003 r_dihedral_angle_4_deg 18.197 r_dihedral_angle_1_deg 5.416 r_scangle_it 3.354 r_scbond_it 2.321 r_angle_refined_deg 1.563 r_mcangle_it 1.231 r_mcbond_it 1.031 r_nbtor_refined 0.322 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.168 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.098 r_symmetry_hbond_refined 0.041 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2277 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 28
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling