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Crystal structure of rat mitochondrial P450 24A1 S57D in complex with CHAPS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TQN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 280 15% PEG 3350, 0.1M Tris-HCl, 0.2 M potassium thiocyanate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 280K
Crystal Properties Matthews coefficient Solvent content 3.02 59.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.609 α = 90 b = 81.647 β = 122.89 c = 108.699 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2008-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 91.29 98.8 0.15 0.15 15.6 10.1 58240
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 98.2 0.56 0.598 4.1 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TQN 2.5 30 58240 43128 2287 97.44 0.20866 0.20636 0.1988 0.25154 0.2431 RANDOM 36.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 1.41 1.07 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.71 r_dihedral_angle_4_deg 20.802 r_dihedral_angle_3_deg 19.209 r_dihedral_angle_1_deg 5.002 r_scangle_it 2.627 r_scbond_it 1.519 r_mcangle_it 1.182 r_angle_refined_deg 1.136 r_mcbond_it 0.608 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.71 r_dihedral_angle_4_deg 20.802 r_dihedral_angle_3_deg 19.209 r_dihedral_angle_1_deg 5.002 r_scangle_it 2.627 r_scbond_it 1.519 r_mcangle_it 1.182 r_angle_refined_deg 1.136 r_mcbond_it 0.608 r_chiral_restr 0.095 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7594 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 298
Software Software Software Name Purpose REFMAC refinement PHASER phasing CNS refinement MOSFLM data reduction SCALA data scaling Blu-Ice data collection