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Crystal structure of Putative protein binding protein (NP_241345.1) from Bacillus halodurans at 2.71 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.07 293 3.5M sodium formate, 0.1M HEPES pH 7.07, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.45 64.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.656 α = 90 b = 73.656 β = 90 c = 115.838 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-08-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97925,0.94926,0.97939 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.71 42.875 99.8 0.056 25.03 5493 -3 85.26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.71 2.81 99.3 0.731 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.71 42.875 5461 245 99.85 0.221 0.221 0.2216 0.233 0.2353 RANDOM 42.496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.34 0.68 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.068 r_dihedral_angle_4_deg 17.762 r_dihedral_angle_3_deg 16.72 r_scangle_it 8.177 r_scbond_it 5.693 r_dihedral_angle_1_deg 5.547 r_mcangle_it 2.885 r_mcbond_it 1.573 r_angle_refined_deg 1.53 r_angle_other_deg 0.996
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.068 r_dihedral_angle_4_deg 17.762 r_dihedral_angle_3_deg 16.72 r_scangle_it 8.177 r_scbond_it 5.693 r_dihedral_angle_1_deg 5.547 r_mcangle_it 2.885 r_mcbond_it 1.573 r_angle_refined_deg 1.53 r_angle_other_deg 0.996 r_mcbond_other 0.306 r_chiral_restr 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 874 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing