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Crystal structure of Turkey (Meleagiris gallopova)hemoglobin at 2.3 Angstrom
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 298 phosphate buffer pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.29 46.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.999 α = 90 b = 79.515 β = 96.05 c = 64.385 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 89.6 0.1096 3 2.47 58386 22860
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 94.7 0.3791 0.9 2.45
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FAW 2.3 25.56 21698 1156 89.61 0.26676 0.26436 0.2792 0.31146 0.3161 RANDOM 47.187
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.04 0.06 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.607 r_dihedral_angle_3_deg 23.231 r_dihedral_angle_4_deg 21.662 r_dihedral_angle_1_deg 5.813 r_scbond_it 1.726 r_angle_refined_deg 1.525 r_mcangle_it 1.183 r_mcbond_it 0.701 r_symmetry_vdw_refined 0.352 r_metal_ion_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.607 r_dihedral_angle_3_deg 23.231 r_dihedral_angle_4_deg 21.662 r_dihedral_angle_1_deg 5.813 r_scbond_it 1.726 r_angle_refined_deg 1.525 r_mcangle_it 1.183 r_mcbond_it 0.701 r_symmetry_vdw_refined 0.352 r_metal_ion_refined 0.341 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.304 r_nbd_refined 0.275 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4469 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 172
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement AUTOMAR data reduction SCALEPACK data scaling