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CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR (LP_0360) FROM LACTOBACILLUS PLANTARUM AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 0.2000M Na2HPO4, 20.0000% PEG-3350, No Buffer pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.173 α = 90 b = 38.054 β = 110.73 c = 42.275 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-07-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97959,0.97886 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 28.307 97.8 0.093 0.093 10.9 3.6 12340 22.604
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 80.2 0.691 0.691 1 2.8 729
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 28.307 12306 599 97.45 0.174 0.172 0.1801 0.218 0.2218 RANDOM 25.623
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.43 -0.93 0.84 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_4_deg 12.786 r_dihedral_angle_3_deg 11.868 r_dihedral_angle_1_deg 6.439 r_scangle_it 6.078 r_scbond_it 5.012 r_mcangle_it 3.223 r_mcbond_it 2.27 r_angle_refined_deg 1.393 r_angle_other_deg 0.998
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_4_deg 12.786 r_dihedral_angle_3_deg 11.868 r_dihedral_angle_1_deg 6.439 r_scangle_it 6.078 r_scbond_it 5.012 r_mcangle_it 3.223 r_mcbond_it 2.27 r_angle_refined_deg 1.393 r_angle_other_deg 0.998 r_mcbond_other 0.534 r_symmetry_vdw_other 0.286 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.191 r_nbtor_refined 0.178 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.089 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1170 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction