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Crystal structure of a LexA protein from Thermotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.8 292 0.1M Bis-tris propane, 0.4M ammonium sulfate, 10% glycerol, pH 6.8, hanging drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.27 45.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.77 α = 90 b = 62.676 β = 98.98 c = 57.017 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirros 2005-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 25 0.044 21.2 3.6 85313 85313
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.37 13.51 79525 6440 92.73 0.205 0.203 0.1995 0.231 0.2282 RANDOM 18.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.01 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.847 r_dihedral_angle_4_deg 17.555 r_dihedral_angle_3_deg 11.284 r_dihedral_angle_1_deg 6.407 r_sphericity_free 4.609 r_scangle_it 4.043 r_sphericity_bonded 3.816 r_scbond_it 3.741 r_rigid_bond_restr 3.574 r_mcangle_it 1.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.847 r_dihedral_angle_4_deg 17.555 r_dihedral_angle_3_deg 11.284 r_dihedral_angle_1_deg 6.407 r_sphericity_free 4.609 r_scangle_it 4.043 r_sphericity_bonded 3.816 r_scbond_it 3.741 r_rigid_bond_restr 3.574 r_mcangle_it 1.897 r_mcbond_it 1.287 r_angle_refined_deg 1.286 r_nbtor_refined 0.312 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.175 r_symmetry_hbond_refined 0.128 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3157 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 6
Software Software Software Name Purpose MLPHARE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction SCALEPACK data scaling HKL-2000 data scaling