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Structure of the CBS pair of a putative D-arabinose 5-phosphate isomerase from Klebsiella pneumoniae subsp. pneumoniae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 278 0.1M Tris pH8.5, 0.2M Ammonium Sulfate, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 3.27 62.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.151 α = 90 b = 102.151 β = 90 c = 214.85 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-02-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97931, 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.9 0.108 8.7 12.2 31947 31947 -3 29.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 100 0.676 12.4 1582
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 41.58 31749 1604 99.84 0.157 0.156 0.185 0.182 0.2027 RANDOM 23.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.161 r_dihedral_angle_4_deg 17.492 r_dihedral_angle_3_deg 13.565 r_dihedral_angle_1_deg 5.623 r_scangle_it 4.194 r_scbond_it 2.669 r_mcangle_it 1.557 r_angle_refined_deg 1.532 r_angle_other_deg 0.941 r_mcbond_it 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.161 r_dihedral_angle_4_deg 17.492 r_dihedral_angle_3_deg 13.565 r_dihedral_angle_1_deg 5.623 r_scangle_it 4.194 r_scbond_it 2.669 r_mcangle_it 1.557 r_angle_refined_deg 1.532 r_angle_other_deg 0.941 r_mcbond_it 0.791 r_mcbond_other 0.198 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1969 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 95
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building