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Structure-Based Design of Novel PIN1 Inhibitors (II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Apo PPIase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 286 0.2M ammonium sulfate, 0.9M Na Citrate, 5mM TCEP, 100mM HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 1.98 37.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.539 α = 90 b = 36.564 β = 100.85 c = 51.279 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 IMAGE PLATE MAR scanner 345 mm plate Osmic Mirrors 2002-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 30 99.5 0.062 21.4 4.2 17861 17861 1 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.94 97 0.318 3.5 3.8 1714
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R Apo PPIase 1.87 15 16933 16933 898 94.2 0.1906 0.1905 0.1905 0.2581 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1 1948
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.073 s_non_zero_chiral_vol 0.035 s_anti_bump_dis_restr 0.035 s_zero_chiral_vol 0.03 s_from_restr_planes 0.0253 s_angle_d 0.021 s_bond_d 0.005 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1773 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 52
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing SHELXL-97 refinement HKL-2000 data reduction HKL-2000 data scaling