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Crystal Structure of the Sixth BRCT Domain of TopBP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 277 0.1M Tris-HCl pH 6.8, PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.767 α = 90 b = 51.824 β = 90 c = 62.086 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD 2008-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.34 50 99 0.054 9 6.5 26433
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.34 1.39 91.6 0.357 3.3 2396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.34 39.78 26385 1336 98.97 0.159 0.158 0.1667 0.173 0.1781 RANDOM 12.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.36 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.144 r_dihedral_angle_4_deg 17.876 r_dihedral_angle_3_deg 12.857 r_dihedral_angle_1_deg 5.887 r_sphericity_free 4.042 r_scangle_it 3.312 r_sphericity_bonded 2.824 r_scbond_it 2.22 r_mcangle_it 1.604 r_rigid_bond_restr 1.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.144 r_dihedral_angle_4_deg 17.876 r_dihedral_angle_3_deg 12.857 r_dihedral_angle_1_deg 5.887 r_sphericity_free 4.042 r_scangle_it 3.312 r_sphericity_bonded 2.824 r_scbond_it 2.22 r_mcangle_it 1.604 r_rigid_bond_restr 1.257 r_angle_refined_deg 1.208 r_mcbond_it 0.994 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 818 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection