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Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 277 0.2 M Sodium citrate, 0.1 M TRIS-HCl pH 8.5, 36% PEG 400, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.93 68.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.081 α = 90 b = 92.173 β = 90 c = 154.726 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 1.000 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.05 90 99.7 12039
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.21 99.9 0.599
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 3IV5 3.05 79.31 11995 580 97.3 0.223 0.221 0.2227 0.252 0.2532 75.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.111 r_dihedral_angle_3_deg 20.705 r_dihedral_angle_4_deg 17.862 r_dihedral_angle_1_deg 5.977 r_angle_refined_deg 1.896 r_angle_other_deg 1.182 r_nbtor_refined 0.221 r_nbd_refined 0.22 r_nbd_other 0.216 r_symmetry_vdw_other 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.111 r_dihedral_angle_3_deg 20.705 r_dihedral_angle_4_deg 17.862 r_dihedral_angle_1_deg 5.977 r_angle_refined_deg 1.896 r_angle_other_deg 1.182 r_nbtor_refined 0.221 r_nbd_refined 0.22 r_nbd_other 0.216 r_symmetry_vdw_other 0.213 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.12 r_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_chiral_restr r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1505 Nucleic Acid Atoms 1101 Solvent Atoms 6 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing