☰ Navigation Tabs
The crystal structure of the protein of DegV family COG1307 with unknown function from Ruminococcus gnavus ATCC 29149
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 289 0.2M Sodium chloride, 0.1M Phosphate-citrate, 10%PEG3000, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.22 61.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.899 α = 90 b = 96.899 β = 90 c = 159.921 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2008-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 83.92 99.41 0.077 17.85 5.2 56152 55821 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.055 99.52 0.352 2.1 4.5 4365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 83.92 56152 55821 2970 99.41 0.16432 0.16198 0.1756 0.20843 0.2122 RANDOM 22.259
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.29 0.58 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.58 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 13.833 r_sphericity_free 7.259 r_dihedral_angle_1_deg 6.239 r_scangle_it 5.628 r_scbond_it 3.665 r_sphericity_bonded 2.874 r_mcangle_it 2.24 r_rigid_bond_restr 1.868
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.58 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 13.833 r_sphericity_free 7.259 r_dihedral_angle_1_deg 6.239 r_scangle_it 5.628 r_scbond_it 3.665 r_sphericity_bonded 2.874 r_mcangle_it 2.24 r_rigid_bond_restr 1.868 r_angle_refined_deg 1.673 r_mcbond_it 1.331 r_angle_other_deg 0.914 r_mcbond_other 0.484 r_chiral_restr 0.091 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4294 Nucleic Acid Atoms Solvent Atoms 545 Heterogen Atoms 50
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling