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Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C6D experimental model PDB 4KVC
Sample High-concentration Fab Fragment of 2H2 antibody binding to immature Dengue virus at pH 7
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details Plunged into liquid ethane (homemade plunger)
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 378 Reported Resolution (Å) 21 Resolution Method FSC 0.5 CUT-OFF Other Details (Single particle--Applied symmetry: I) Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (3C6D, 4KVC) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment 2011-04-07 Temperature (Kelvin) 100 Microscope Model FEI/PHILIPS CM200FEG Minimum Defocus (nm) 2000 Maximum Defocus (nm) 5000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 50000 Calibrated Magnification 51040 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL FITTING EMfit RECONSTRUCTION EMAN 1 RECONSTRUCTION EMAN 2 RECONSTRUCTION jspr
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details Film