Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
With 2.5 uL sample on carbon side, add 3 uL dilution buffer (100 mM NaCl, 50 mM Tris, pH 8.0) to back side. Blot 3-5 seconds from back side and plunge ...
With 2.5 uL sample on carbon side, add 3 uL dilution buffer (100 mM NaCl, 50 mM Tris, pH 8.0) to back side. Blot 3-5 seconds from back side and plunge into liquid ethane with a homemade plunger.
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
3210
Reported Resolution (Å)
8.6
Resolution Method
FSC 0.5 CUT-OFF
Other Details
(Helical Details: The segments were aligned and reconstructed using Frealign. Twofold symmetry was imposed using IHRSR++.)
Refinement Type
Symmetry Type
HELICAL
Axial Symmetry
C1
Axial Rise
7.247
Angular Rotation
31.13
Map-Model Fitting and Refinement
Id
1 (3H47)
2 (2KOD)
Refinement Space
REAL
REAL
Refinement Protocol
FLEXIBLE FIT
FLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
METHOD--The MDFF-derived HOH structure was equilibrated in 1 M NaCl FOR 425 ns
using MD without applying restraints. PDB entries 3H47 AND 2KOD were t ...
METHOD--The MDFF-derived HOH structure was equilibrated in 1 M NaCl FOR 425 ns
using MD without applying restraints. PDB entries 3H47 AND 2KOD were the
starting structures. REFINEMENT PROTOCOL--flexible
METHOD--The MDFF-derived HOH structure was equilibrated in 1 M NaCl FOR 425 ns
using MD without applying restraints. PDB entries 3H47 AND 2KOD were t ...
METHOD--The MDFF-derived HOH structure was equilibrated in 1 M NaCl FOR 425 ns
using MD without applying restraints. PDB entries 3H47 AND 2KOD were the
starting structures. REFINEMENT PROTOCOL--flexible