3J1A
HK97-like fold fitted into 3D reconstruction of bacteriophage CW02
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s) | |||
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Type | Source | Accession Code | Details |
experimental model | PDB | 1OHG |
Sample |
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Bacteriophage CW02 |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK III |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blotted for 4 seconds before plunging into liquid ethane (FEI Vitrobot MarK III) |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 8695 |
Reported Resolution (Å) | 16 |
Resolution Method | FSC 0.5 CUT-OFF |
Other Details | Particles were manually selected using X3D |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | I |
Map-Model Fitting and Refinement | |||||
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Id | 1 (1OHG) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | REFINEMENT PROTOCOL--Automatic rigid body DETAILS--C-alpha coordinates pertaining to the HK97-fold were separately fitted as rigid bodies into capsid ... |
Data Acquisition | |||||||||
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Detector Type | KODAK SO-163 FILM | ||||||||
Electron Dose (electrons/Å**2) |
Imaging Experiment | 1 |
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Date of Experiment | 2009-07-01 |
Temperature (Kelvin) | 93 |
Microscope Model | FEI TECNAI F30 |
Minimum Defocus (nm) | 200 |
Maximum Defocus (nm) | 2800 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | GATAN LIQUID NITROGEN |
Nominal Magnification | 39000 |
Calibrated Magnification | 37564 |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
MODEL FITTING | UCSF Chimera | |
RECONSTRUCTION | EM3DR | 2 |
RECONSTRUCTION | PFT | 2 |
RECONSTRUCTION | PFT3DR |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
whole micrograph |