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Crystal structure of Y116T mutant of 5-HYDROXYISOURATE HYDROLASE (TRP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H1X PDB ENTRY 2H1X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 277 0.1M HEPES, 20% PEG10,000, pH7.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.92 35.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.92 α = 90 b = 103.69 β = 108.81 c = 52.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.979 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 44.91 83.6 0.052 9.7 3.5 43900 43900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.68 1.77 75.9 0.49 1.8 3.5 5810
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2H1X 1.68 25.44 41609 2250 83.11 0.20578 0.20293 0.2181 0.25962 0.2679 RANDOM 20.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.83 3.67 -3.39 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.417 r_dihedral_angle_4_deg 28.79 r_dihedral_angle_3_deg 14.859 r_dihedral_angle_1_deg 6.602 r_scangle_it 4.262 r_scbond_it 3 r_angle_refined_deg 2.088 r_mcangle_it 1.777 r_mcbond_it 1.094 r_chiral_restr 0.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.417 r_dihedral_angle_4_deg 28.79 r_dihedral_angle_3_deg 14.859 r_dihedral_angle_1_deg 6.602 r_scangle_it 4.262 r_scbond_it 3 r_angle_refined_deg 2.088 r_mcangle_it 1.777 r_mcbond_it 1.094 r_chiral_restr 0.144 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3616 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling