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Crystal structure of human copper homeostasis protein CutC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X7I PDB ENTRY 1X7I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 0.1 M citric acid, pH4.0, and 10% polyethylene glycol 6000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.16 α = 76.84 b = 78.406 β = 87.88 c = 170.349 γ = 71.86
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2007-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.5 0.06 0.06 23.7 3.9 129429 127488 49.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 97.9 0.299 0.299 4.1 4 12925
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1X7I 2.5 50 122916 121060 6361 98.49 0.23584 0.23584 0.23338 0.2412 0.28254 0.2437 RANDOM 56.004
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.72 0.26 -0.8 0.34 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_3_deg 19.877 r_dihedral_angle_4_deg 19.247 r_scangle_it 5.667 r_dihedral_angle_1_deg 5.454 r_sphericity_free 4.343 r_scbond_it 3.138 r_mcangle_it 3.137 r_rigid_bond_restr 2.143 r_mcbond_it 1.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_3_deg 19.877 r_dihedral_angle_4_deg 19.247 r_scangle_it 5.667 r_dihedral_angle_1_deg 5.454 r_sphericity_free 4.343 r_scbond_it 3.138 r_mcangle_it 3.137 r_rigid_bond_restr 2.143 r_mcbond_it 1.696 r_angle_refined_deg 1.39 r_sphericity_bonded 1.242 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.257 r_nbd_refined 0.245 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21852 Nucleic Acid Atoms Solvent Atoms 888 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection CNS refinement REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing